- Introduce better functionality for making custom filters
- Changes to utils
- Allow the "search" relation to filters for doing regex search. Primarily meant for crude searching in the CSQ from VEP. Splitting on
,and and require regex to match all parts.
- Changes to
sv_postprocessingallow checking for existence of INFO-fields and setting filter exceptions.
- Introduce more flexible filtering definitions
- Changes to standardization
- Ensure minimal starting position is base 1
CNfrom Canvas to the
FORMATfield when Canvas is merged with Manta
- Rescue ACMG_class 4,5 and add ACMG_class column to TSV output
- Removes the
- Directly installs runnable scripts
- Moves parsing and formatting of VCFs into
- Remove non-variants (
- Add INFO fields
canvasBCto back up FORMAT fields
BC. Useful for merging.
v0.9.0 of this repository was never released, but is a collection of the Python scripts hardcoded in the following repositories