Changelog
6.2 (2023-03-30)
- Issue #7: new location for genepanels. Format of panels changed as they are created by the Gene Panel Builder
- Issue #4: Add variables for parental CNV_VCF files in annopipe
- Issue #5: Don't create per-base.bed.gz as it's not used
- Issue #10: Bug: basepipe fails for HG002 due to lacking variable
- Issue #11: Bug: QC outside threshold limits still passes as OK
6.1.1 (2023-01-24)
- don't change ownership or permission of files copied to preprocessed. TSD's cluster often fails on 'chown'
6.1 (2022-12-08)
- git backed config file defining svtools 0.1.4
- use rolling logging in executor
- msh2 caller for WGS samples
- PMS2 pseudegene masking for WGS samples
- Add contamination fraction filter to reduce sensitivity of the caller
- removed old, unused settings file config/nextflow-test.config
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